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                <h2 id="azuresas">AzureSAS</h2>
<p>Create shared access signatures (SAS) URLs for containers, files, folders in your Azure storage account.</p>
<p>Note that each file in a container/folder has to be downloaded separately, so if there are 1000 files in the container, 1000 SAS URLs will be provided</p>
<p>Choose either the <a href="#azuresas-container"><code>container</code></a>, <a href="#azuresas-file"><code>file</code></a>, or  <a href="#azuresas-folder"><code>folder</code></a> functionality</p>
<h4 id="general-usage">General usage</h4>
<pre><code>usage: AzureSAS [-h] {container,file,folder} ...

Create shared access signatures (SAS) for containers/files/folders from Azure storage.
Note that each file in the container/folder has to be downloaded separately, so if
there are 1000 files in the container, 1000 SAS will be provided

optional arguments:
  -h, --help            show this help message and exit

Available functionality:
  {container,file,folder}
    container           Create SAS for all files in a container in Azure storage
    file                Create a SAS for a file in Azure storage
    folder              Create SAS for all files in a folder in Azure storage
</code></pre>

<h3 id="azuresas-container">AzureSAS container</h3>
<p>Create SAS URLs for all files in a container in your Azure storage account</p>
<h4 id="required-arguments">Required arguments:</h4>
<ul>
<li>container name</li>
<li>account name</li>
</ul>
<h4 id="optional-arguments">Optional arguments:</h4>
<ul>
<li>output file: file in which the SAS URLs are to be written. Default is <code>sas.txt</code> in your current working directory</li>
<li>expiry: the number of days the SAS URL with be valid. Minimum is 1, maximum is 365. Default is 10</li>
<li>passphrase used to store your connection string in the system keyring (default is AzureStorage)</li>
<li>verbosity: set the logging level. Options are debug,info,warning,error,critical. Default is info</li>
</ul>
<h4 id="example-commands">Example commands:</h4>
<p>These commands will use <code>container-name</code> as the name of the container, and <code>account_name</code> as the name of the storage account</p>
<p>To create SAS URLs with default settings:</p>
<p><code>AzureSAS container -a account_name -c container-name</code></p>
<p>To create SAS URLs with an expiry of 15 days:</p>
<p><code>AzureSAS container -a account_name -c container-name -e 15</code></p>
<p>To create SAS URLs, and save them to the file <code>sas_urls.txt</code> in your current working directory:</p>
<p><code>AzureSAS container -a account_name -c container-name -o sas_urls.txt</code></p>
<p>To create SAS URLs, and save them to the file <code>sas_urls.txt</code> nested in folder <code>outputs</code> in your current working directory:</p>
<p><code>AzureSAS container -a account_name -c container-name -o outputs/sas_urls.txt</code></p>
<h4 id="usage">Usage</h4>
<pre><code>usage: AzureSAS container [-h] -c CONTAINER_NAME -a ACCOUNT_NAME [-p PASSPHRASE] [-v VERBOSITY] [-e EXPIRY] [-o OUTPUT_FILE]

Create SAS URLs for all files in a container in Azure storage

optional arguments:
  -h, --help            show this help message and exit
  -c CONTAINER_NAME, --container_name CONTAINER_NAME
                        Name of the Azure storage container. Note that container names must be lowercase, between 3 and 63 characters, start with a letter or number, and can contain only letters, numbers, and the dash (-) character. Consecutive dashes are not permitted.
  -a ACCOUNT_NAME, --account_name ACCOUNT_NAME
                        Name of the Azure storage account
  -p PASSPHRASE, --passphrase PASSPHRASE
                        The passphrase to use when encrypting the azure storage-specific connection string to the system keyring. Default is &quot;AzureStorage&quot;.
  -v VERBOSITY, --verbosity VERBOSITY
                        Set the logging level. Options are debug, info, warning, error, and critical. Default is info.
  -e EXPIRY, --expiry EXPIRY
                        The number of days that the SAS URL will be valid. The minimum is 1, and the maximum is 365. The default is 10.
  -o OUTPUT_FILE, --output_file OUTPUT_FILE
                        Name and path of file in which the SAS URLs are to be saved. Default is $CWD/sas.txt
</code></pre>

<h3 id="azuresas-file">AzureSAS file</h3>
<p>Create a SAS URL for a file in a container in your Azure storage account</p>
<h4 id="required-arguments_1">Required arguments:</h4>
<ul>
<li>container name</li>
<li>account name</li>
<li>file name</li>
</ul>
<h4 id="optional-arguments_1">Optional arguments:</h4>
<ul>
<li>output file: file in which the SAS URLs are to be written. Default is <code>sas.txt</code> in your current working directory</li>
<li>expiry: the number of days the SAS URL with be valid. Minimum is 1, maximum is 365. Default is 10</li>
<li>passphrase used to store your connection string in the system keyring (default is AzureStorage)</li>
<li>verbosity: set the logging level. Options are debug,info,warning,error,critical. Default is info</li>
</ul>
<h4 id="example-commands_1">Example commands:</h4>
<p>These commands will use <code>container-name</code> as the name of the container, and <code>account_name</code> as the name of the storage account</p>
<p>To create a SAS URL for file <code>file_name.gz</code> with default settings:</p>
<p><code>AzureSAS file -a account_name -c container-name -f file_name.gz</code></p>
<p>To create a SAS URL for file <code>file_name.gz</code> nested in folder <code>outputs</code> with default settings:</p>
<p><code>AzureSAS file -a account_name -c container-name -f outputs/file_name.gz</code></p>
<p>To create a SAS URL for file <code>file_name.gz</code> with an expiry of 15 days:</p>
<p><code>AzureSAS file -a account_name -c container-name f file_name.gz -e 15</code></p>
<p>To create a SAS URL for file <code>file_name.gz</code>, and save it to the file <code>sas_urls.txt</code> in your current working directory:</p>
<p><code>AzureSAS file -a account_name -c container-name -f file_name.gz -o sas_urls.txt</code></p>
<p>To create a SAS URL for file <code>file_name.gz</code>, and save it to the file <code>sas_urls.txt</code> nested in folder <code>outputs</code> in your current working directory:</p>
<p><code>AzureSAS file -a account_name -c container-name -f file_name.gz -o outputs/sas_urls.txt</code></p>
<h4 id="usage_1">Usage</h4>
<pre><code>usage: AzureSAS file [-h] -c CONTAINER_NAME -a ACCOUNT_NAME [-p PASSPHRASE] [-v VERBOSITY] [-e EXPIRY] [-o OUTPUT_FILE] -f FILE

Create a SAS URL for a file in Azure storage

optional arguments:
  -h, --help            show this help message and exit
  -c CONTAINER_NAME, --container_name CONTAINER_NAME
                        Name of the Azure storage container. Note that container names must be lowercase, between 3 and 63 characters, start with a letter or number, and can contain only letters, numbers, and the dash (-) character. Consecutive dashes are not permitted.
  -a ACCOUNT_NAME, --account_name ACCOUNT_NAME
                        Name of the Azure storage account
  -p PASSPHRASE, --passphrase PASSPHRASE
                        The passphrase to use when encrypting the azure storage-specific connection string to the system keyring. Default is &quot;AzureStorage&quot;.
  -v VERBOSITY, --verbosity VERBOSITY
                        Set the logging level. Options are debug, info, warning, error, and critical. Default is info.
  -e EXPIRY, --expiry EXPIRY
                        The number of days that the SAS URL will be valid. The minimum is 1, and the maximum is 365. The default is 10.
  -o OUTPUT_FILE, --output_file OUTPUT_FILE
                        Name and path of file in which the SAS URLs are to be saved. Default is $CWD/sas.txt
  -f FILE, --file FILE  Path of file in Azure storage from which a SAS URL is to be created. e.g. 2022-SEQ-0001_S1_L001_R1_001.fastq.gz
</code></pre>

<h3 id="azuresas-folder">AzureSAS folder</h3>
<p>Create SAS URLs for all files in a folder in your Azure storage account</p>
<h4 id="required-arguments_2">Required arguments:</h4>
<ul>
<li>container name</li>
<li>account name</li>
<li>folder name</li>
</ul>
<h4 id="optional-arguments_2">Optional arguments:</h4>
<ul>
<li>output file: file in which the SAS URLs are to be written. Default is <code>sas.txt</code> in your current working directory</li>
<li>expiry: the number of days the SAS URL with be valid. Minimum is 1, maximum is 365. Default is 10</li>
<li>passphrase used to store your connection string in the system keyring (default is AzureStorage)</li>
<li>verbosity: set the logging level. Options are debug,info,warning,error,critical. Default is info</li>
</ul>
<h4 id="example-commands_2">Example commands:</h4>
<p>These commands will use <code>container-name</code> as the name of the container, and <code>account_name</code> as the name of the storage account</p>
<p>To create SAS URLs for all files in folder <code>folder_name</code> with default settings:</p>
<p><code>AzureSAS folder -a account_name -c container-name -f folder_name</code></p>
<p>To create SAS URLs for all files in folder <code>folder_name</code> nested in folder <code>outputs</code> with default settings:</p>
<p><code>AzureSAS folder -a account_name -c container-name -f outputs/folder_name</code></p>
<p>To create SAS URLs for all files in folder <code>folder_name</code> with an expiry of 15 days:</p>
<p><code>AzureSAS folder -a account_name -c container-name f folder_name -e 15</code></p>
<p>To create SAS URLs for all files in folder <code>folder_name</code>, and save them to the file <code>sas_urls.txt</code> in your current working directory:</p>
<p><code>AzureSAS folder -a account_name -c container-name -f folder_name -o sas_urls.txt</code></p>
<p>To create SAS URLs for all files in folder <code>folder_name</code>, and save them to the file <code>sas_urls.txt</code> nested in folder <code>outputs</code> in your current working directory:</p>
<p><code>AzureSAS folder -a account_name -c container-name -f folder_name -o outputs/sas_urls.txt</code></p>
<h4 id="usage_2">Usage</h4>
<pre><code>usage: AzureSAS folder [-h] -c CONTAINER_NAME -a ACCOUNT_NAME [-p PASSPHRASE] [-v VERBOSITY] [-e EXPIRY] [-o OUTPUT_FILE] -f FOLDER

Create SAS URLs for all files in a folder in Azure storage

optional arguments:
  -h, --help            show this help message and exit
  -c CONTAINER_NAME, --container_name CONTAINER_NAME
                        Name of the Azure storage container. Note that container names must be lowercase, between 3 and 63 characters, start with a letter or number, and can contain only letters, numbers, and the dash (-) character. Consecutive dashes are not permitted.
  -a ACCOUNT_NAME, --account_name ACCOUNT_NAME
                        Name of the Azure storage account
  -p PASSPHRASE, --passphrase PASSPHRASE
                        The passphrase to use when encrypting the azure storage-specific connection string to the system keyring. Default is &quot;AzureStorage&quot;.
  -v VERBOSITY, --verbosity VERBOSITY
                        Set the logging level. Options are debug, info, warning, error, and critical. Default is info.
  -e EXPIRY, --expiry EXPIRY
                        The number of days that the SAS URL will be valid. The minimum is 1, and the maximum is 365. The default is 10.
  -o OUTPUT_FILE, --output_file OUTPUT_FILE
                        Name and path of file in which the SAS URLs are to be saved. Default is $CWD/sas.txt
  -f FOLDER, --folder FOLDER
                        Name of the folder for which SAS URLs are to be created for all files. e.g. InterOp
</code></pre>
              
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