def copySequenceClean(fromFile,projectFolderPath):
    # Copy sequence and clean heads
    f1 = open(fromFile,"r")
    f2 = open(os.path.join(projectFolderPath,"sequence.fasta"),"w+")
    f3 = open(os.path.join(projectFolderPath,"sequence_heads.txt"),"w+")
    line = f1.readline()
    counter = 0
    while line!="":
        if(line.startswith(">")):
            counter += 1
            f3.write(">seq"+str(counter)+"\t"+line)
            f2.write(">seq"+str(counter)+"\n")
        else:
            f2.write(line.upper())
        line = f1.readline()
    f1.close()
    f2.close()
    f3.close()
    # Create reverse complement Fasta file
    records = map(make_rc_record, SeqIO.parse(os.path.join(projectFolderPath,"sequence.fasta"), "fasta"))
    SeqIO.write(records, os.path.join(projectFolderPath,"sequence_rc.fasta"), "fasta")
    records = map(make_rc_record, SeqIO.parse(os.path.join(projectFolderPath,"sequence_rc.fasta"), "fasta"))
    SeqIO.write(records, os.path.join(projectFolderPath,"sequence.fasta"), "fasta")