## Installation

AzureStorage is available as a conda package, so conda must be installed on your system.

### Conda

Skip this step if you have already installed conda

```
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
bash miniconda.sh -b -p $HOME/miniconda
conda update -q conda
```

### AzureStorage

You can now install the AzureStorage package:

`conda install -c olc-bioinformatics azure-storage=0.0.2`

### Credentials 

You must enter your Azure storage connection string and account name into the system keyring before running any of the other scripts

[Find your connection string](https://docs.microsoft.com/en-us/azure/storage/common/storage-configure-connection-string#:~:text=You%20can%20find%20your%20storage,primary%20and%20secondary%20access%20keys.)

[Find your account key](https://www.zenko.io/blog/how-to-find-keys-and-account-info-for-aws-azure-and-google/#:~:text=Azure%20Account%20Name%C2%A0%3D%20the%20name%20of%20your%20Azure%20storage%20account%20located%20on%20the%20top%20of%20the%20Azure%20Portal%20(screenshot%20below%20%E2%80%93%20%E2%80%9Cscalitydemo%E2%80%9D%20is%20Azure%20Account%20Name).)

Once you know your account key and connection string, run:

`AzureCredentials store`

Your credentials will be securely stored in the system keyring

### Tests

If you encounter issues with the AzureStorage package, tests are available to ensure that the installation was successful and your credentials are valid.

You will need to clone this repository and run the tests with pytest


`git clone https://github.com/OLC-LOC-Bioinformatics/AzureStorage.git`

`cd AzureStorage`

`python -m pytest tests/ --cov=azure_storage --cov-config=.coveragec`